species:   Artha
pid:       MI0000978
parent:    ath-MIR169d
paralog:   
locus:     1:20039463-20039616
matures:   ['UGAGCCAAGGAUGACUUGCCG', 'GCAAGUUGACCUUGGCUCUGU']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 1:20039463-20039616

0 out of bounds
355 alignments
355 proper strand
315 stranded perfect matches

                                      ***********************                                  ***********************                                    
GUAUCAUAGAGUCUUGCAUGGAAAAAUUAAAGAAUGAGAUUGAGCCAAGGAUGACUUGCCGAUGUUAUCAACAAAUCUUAACUGAUUUUGGUGUCCGGCAAGUUGACCUUGGCUCUGUUUCCUUCUUUUCUUUUCAAUGUCAAACUCUAGAUAU
(((((.((((((.((((((.(((((...((((((.(((((.(((((((((..(((((((((....((((((..((((......))))))))))..)))))))))..))))))))).))))).))))))..))))).))).))))))))))))))
----------------------------------------UGAGCCAAGGAUGACUUGCCG--------------------------------------------------------------------------------------------- l=21 a=0 c
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGU------------------------------------ l=21 a=155 c*
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGU------------------------------------ l=21 a=155 ma
----------------------------------------UGAGCCAAGGAUGACUUGCCG--------------------------------------------------------------------------------------------- l=21 a=0 ma*

--------------------------------------------------------------------------------------------------CAAGUUGACCUUGGCUCUGUU----------------------------------- l=21 a=2 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCU-------------------------------------- l=19 a=2 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUG------------------------------------- l=20 a=1 
-------------------------------------------------------------------------------------------------GCAAGcUGACCUUGGCUCUGU------------------------------------ l=21 a=1 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGU------------------------------------ l=21 a=155 (c*,ma)
-------------------------------------------------------------------------------------------------GCAAGUcGACCUUGGCUCUGU------------------------------------ l=21 a=1 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUaU------------------------------------ l=21 a=1 
-------------------------------------------------------------------------------------------------GuAAGUUGACCUUGGCUCUGU------------------------------------ l=21 a=1 
-------------------------------------------------------------------------------------------------GCAAGUUGACCaUGGCUCUGU------------------------------------ l=21 a=2 
-------------------------------------------------------------------------------------------------GCAAGgUGACCUUGGCUCUGU------------------------------------ l=21 a=1 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGuUCUGU------------------------------------ l=21 a=1 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGg------------------------------------ l=21 a=1 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGaCUCUGU------------------------------------ l=21 a=1 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGUU----------------------------------- l=22 a=147 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGUc----------------------------------- l=22 a=17 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGUa----------------------------------- l=22 a=3 
-------------------------------------------------------------------------------------------------GCAAGUUGgCCUUGGCUCUGUU----------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------GCAAGUUGACCcUGGCUCUGUU----------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGUg----------------------------------- l=22 a=2 
-------------------------------------------------------------------------------------------------GCAAGUUGcCCUUGGCUCUGUU----------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------aCAAGUUGACCUUGGCUCUGUU----------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------GCAAGUUGACCUcGGCUCUGUU----------------------------------- l=22 a=1 
------------------------------------------------------------------------------------------------GGCAAGUUGACCUUGGCUCUGUU----------------------------------- l=23 a=2 
-----------------------------------------------------------------------------------------------CGGCAAGUUGACCUUGGCUCU-------------------------------------- l=21 a=1 
----------------------------------------------------------------------------------------------CCGGCAAGUUGACCUUGGCUCUGU------------------------------------ l=24 a=1 
----------------------------------------------------------------------------------------------CCGGCAAGUUGACCUUGGCUCUuU------------------------------------ l=24 a=3 
--------------------------------------------------------------------------------------------GUCCGGCAAGUUGACCUUGGCUCU-------------------------------------- l=24 a=1 
------------------------------------------------------------------------------------------GUGUCCGGCAAGUUGACCUUGGCUCUGUUU---------------------------------- l=30 a=1 
------------------UGGAAAAAUUAAAGAAUGAGAU------------------------------------------------------------------------------------------------------------------ l=22 a=2 

mb-01111
ax-1011111
ku-11
ss-111111111110
fn-111
